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GenNet: A Tool for Qualitative and Quantitative Modelling of Gene Regulatory Networks
GenNet: A Tool for Qualitative and Quantitative Modelling of Gene Regulatory Networks
Gene regulatory networks have an important role to study the behaviour of genes. By analysing these Gene Regulatory Networks we can get the detailed information i.e. the occurrence of diseases by changing behaviour of GRNs. Many different approaches are used (i.e. qualitative modelling and hybrid modelling) and various tools (i.e. GenoTech, GINsim) have been developed to model and simulate gene regulatory networks. GenoTech allows the user to specify a GRN on Graphical User Interface (GUI) according to the asynchronous multivalued logical functions of René Thomas, and to simulate and/or analyse its qualitative dynamical behaviour. René Thomas discrete modelling of gene regulatory network (GRN) is a well known approach to study the dynamics of genes. It deals with some parameters which reflect the possible targets of trajectories. Those parameters are priory unknown. These unknown parameters are fetched using another model checking tool SMBioNet. SMBioNet produces all the possible parameters satisfying the given Computational Logic Tree (CTL) formula as input. This approach involving logical parameters and conditions also known as qualitative modelling of GRN. However, this approach neglects the time delays for a gene to pass from one level of expression to another one i.e. inhibition to activation and vice versa. To find out these time delays, another modelling tool HyTech is used to perform hybrid modelling of GRN. We have developed a Java based tool called GenNet http://asanian.com/gennet to facilitate the model checking user by providing a unique GUI layout for both qualitative and quantitative modelling of GRNs. As we discussed, three separate modelling tools are used for complete modelling and analysis of a GRN. This process is much lengthy and takes too much time. GenNet assists the modelling users by providing some extra features i.e. CTL editor, parameters filtering and input/output files management. GenNet takes a GRN network as input and does all the rest of computations i.e. CTL verification, K-parameters generation, parameter implication to GRN, state graph, hybrid modelling and parameter filtration automatically. GenNet serves the user by computing the results within seconds that were taking hours and days of manual computation
LEEPIANS
Jayanth Devulapally's Résumé
Jayanth Devulapally's Résumé
Created using the Deedy CV/Resume XeLaTeX Template Version 1.0 (5/5/2014)
jayanth devulapally
Basic Resume
Basic Resume
Deedy - One Page Two Column Resume LaTeX Template Version 1.1 (30/4/2014) Original author: Debarghya Das (http://debarghyadas.com) Original repository: https://github.com/deedydas/Deedy-Resume IMPORTANT: THIS TEMPLATE NEEDS TO BE COMPILED WITH XeLaTeX This template uses several fonts not included with Windows/Linux by default. If you get compilation errors saying a font is missing, find the line on which the font is used and either change it to a font included with your operating system or comment the line out to use the default font. TODO: 1. Integrate biber/bibtex for article citation under publications. 2. Figure out a smoother way for the document to flow onto the next page. 3. Add styling information for a "Projects/Hacks" section. 4. Add location/address information 5. Merge OpenFont and MacFonts as a single sty with options. CHANGELOG: v1.1: 1. Fixed several compilation bugs with \renewcommand 2. Got Open-source fonts (Windows/Linux support) 3. Added Last Updated 4. Move Title styling into .sty 5. Commented .sty file. Known Issues: 1. Overflows onto second page if any column's contents are more than the vertical limit 2. Hacky space on the first bullet point on the second column.
Yulong Tan
Émade - A Dictionary
Émade - A Dictionary
Émadian Dictionary
tarheelscouse
Base de datos NoSQL — Caso de estudio: Postgres como solución NoSQL
Base de datos NoSQL — Caso de estudio: Postgres como solución NoSQL
Las bases de datos relacionales han sido las herramientas por excelencia para el almacenamiento de la información en los sistemas informáticos. No obstante, las bases de datos NoSQL, como tendencia, han venido ganando espacio especialmente por la escalabilidad y velocidad en sus tiempos de respuestas. PostgreSQL ha incorporado algunas características de tipo NoSQL, como el almacenamiento efímero y el manejo de datos JSON; características que pueden aprovecharse para realizar acciones desde el gestor dándole mayor potencia. El objetivo de este artículo es evaluar, mediante toda la documentación encontrada, el comportamiento de las características NoSQL de PostgreSQL frente a un gestor NoSQL, comparandola con MongoDB, respecto a los tiempos de respuestas y dar a conocer las ventajas de uno con respecto al otro. Palabras Claves: Características NoSQL en PostgreSQL, MongoDB, PostgreSQL
Jean Carlos
Peter J's CV
Peter J's CV
Created using the Deedy CV/Resume XeLaTeX Template Version 1.0 (5/5/2014) This template has been downloaded from: http://www.LaTeXTemplates.com Original author: Debarghya Das (http://www.debarghyadas.com) With extensive modifications by: Vel (vel@latextemplates.com)
Peter J
AIRQUD Plugin para QGIS que permite realizar un modelo básico de la dispersión de contaminantes por fuentes fijas.
AIRQUD Plugin para QGIS que permite realizar un modelo básico de la dispersión de contaminantes por fuentes fijas.
This paper describes the creation of the tool to approach to models of dispersion of pollutants, framed under a methodology of software development, which identified the sequence to follow in the life cycle extension development, through an incremental model in which the stages of the project were identified. At each stage a series of activities that helped define inputs and outputs in each was made. According the above in the first stage the functional requirements defined and nonfunctional, then in stage two architecture and graphical interface, followed by the coding stage extension and finally the stage of performance testing and user, in order to improve or correct the functionality of the extension.
Lady Rodriguez- Sindy Quijano
WPP Template
WPP Template
The template of "white paper project" in CyberAgent, inc.
馬場惇
Blockchain Multiparty Computation Markets at Scale
Blockchain Multiparty Computation Markets at Scale
We explore ways of allowing for the offloading of computationally rigorous tasks from devices with slow logical processors onto a network of anonymous peer-processors. Recent advances in secret sharing schemes, decentralized consensus mechanisms, and multiparty computation (MPC) protocols are combined to create a P2P MPC market. Unlike other computational "clouds", ours is able to generically compute any arithmetic circuit, providing a viable platform for processing on the semantic web. Finally, we show that such a system works in a hostile environment, that it scales well, and that it adapts very easily to any future advances in the complexity theoretic cryptography used. Specifically, we show that the feasibility of our system can only improve, and is historically guaranteed to do so.
Charles Noyes

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