AMU thesis template

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Author
Sidore Marlon
Last Updated
3 years ago
License
Other (as stated in the work)
Abstract
A thesis template for theses.
Everything is up to date (2018) and commented for use by anyone that doesn't necessarily have a wide knowledge of informatics.
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%%%%%%%%%%%%% Doing my own template
%%%%%%%%%%%%% Following the specifications of
% http://bu.univ-amu.libguides.com/c.php?g=511743&p=4025195
%%%%%%%%%%%%% Sober amu thesis template

% LAYOUT %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Using the report class
\documentclass[12pt, 			% Recommended
               twoside,         % SHOULD BE
               %singlespacing
			  ]{report}

%%% Margins
\usepackage[a4paper,
			%width=150mm,
			top=30mm,
			bottom=30mm,
            right=30mm,
            left=30mm,
            % Offset to bind pages
            bindingoffset=6mm,  
            % To make room for the header
            headheight=20mm,    
           ]{geometry}

% Line spacing - 1 is normal, 1.3 is onehalf and 1.6 is double spacing
\linespread{1}

%%% Change titles & stuff
\makeatletter
\renewcommand{\@chapapp}{Section}
\makeatother
\renewcommand{\abstractname}{Résumé}
\renewcommand{\contentsname}{Table des matières}
\renewcommand{\appendixname}{Table des annexes}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Miscellaneous packages %%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Really basic packages here to handle languages
\usepackage[english, french]{babel}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
% The font
\usepackage{concmath}
% Highlight stuff for revisions + colors and units
\usepackage{color}
\usepackage[x11names]{xcolor}
\usepackage{graphicx}
\usepackage{amsmath,amssymb, bm}
\usepackage[squaren, Gray, cdot]{SIunits}

% Where your pictures are
\graphicspath{ {pics/} }

%%% Header & Footer
\usepackage{fancyhdr}
\pagestyle{fancy}
\fancyhead{}
\fancyhead[RO,LE]{\rightmark}
\fancyfoot{}
\fancyfoot[LE,RO]{\thepage}
\fancyfoot[CE,CO]{\leftmark}
\fancyfoot[RE,LO]{Prénom Nom}
\renewcommand{\headrulewidth}{0.4pt}
\renewcommand{\footrulewidth}{0.4pt}

% Some symbols
\usepackage{textcomp}

% To include pdfs, like articles, directly
\usepackage{pdfpages}            

% For figures
\usepackage{caption}
\usepackage{subcaption}

% For text boxes spanning multiple pages
% And to add a color to it
\usepackage{framed}
% Access the different colors here
% http://mirrors.standaloneinstaller.com/ctan/macros/latex/contrib/xcolor/xcolor.pdf page 40
\colorlet{shadecolor}{LightSteelBlue1}
\colorlet{framecolor}{Blue4}

% New environment for shaded frames
\newenvironment{frshaded}{%
\def\FrameCommand{
\fboxrule=\FrameRule
\fboxsep=\FrameSep
\fcolorbox{framecolor}{shadecolor}
}%
\MakeFramed {\FrameRestore}}%
{\endMakeFramed}
% Use like this
%\begin{frshaded}
%\end{frshaded}

% To make todo notes, exemple in the intro
\usepackage[textwidth=3cm]{todonotes}

% For appendices
\usepackage[toc,page]{appendix}
% And change the names
\renewcommand{\appendixname}{Annexe}
\renewcommand{\appendixtocname}{Annexes}
\renewcommand{\appendixpagename}{Annexes}

% Line breaks in text
% Warning: should find something better for urls >.<
\sloppy

% Add quotes
\usepackage{dirtytalk}

% Fancy tables
\usepackage{multirow}

% Urls
\usepackage{url}

% for pdf docs to read on computers
% use this when compiling the pdf version (to send by mail)
% comment it when you want to print it
\usepackage{hyperref}

% Package only for the template
\usepackage{lipsum}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Glossary %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% if you need a glossary
% \usepackage{glossaries}         
% \makeglossaries

% \newglossaryentry{ABF}{name=ABF, description={Adaptive Biasing Force}}

% Use \newglossaryentry{utc}{name=UTC, description={Coordinated Universal Time}} to add a glossary entry within the document
% Use gls{utc} to use that entry somewhere

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Bibliography %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Required to generate language-dependent quotes in the bibliography
\usepackage[autostyle=true]{csquotes}

% Use biber - way better than bibtex
\usepackage[backend=biber,
% 			citestyle=numeric-comp,
%             bibstyle=numeric,
            citestyle=authoryear,
            bibstyle=authoryear,
            %dashed=false,
            sorting=nyt,
            natbib=true,
            doi=true,
            url=false,
            isbn=false,
            eprint=false,
            giveninits=true,
            uniquename=init,
            maxcitenames=1, 
            minbibnames=6, 
            maxbibnames=6
            ]{biblatex}

% The filename of the bibliography
\addbibresource{all.bib} 
% To escape some underscores in the .bib exported from mendeley
\DeclareSourcemap{ % Used when .bib/Bibliography is compiled, not when document is
    \maps{
        \map{ % Replaces '{\_}', '{_}' or '\_' with just '_'
            \step[fieldsource=url,
                  match=\regexp{\{\\\_\}|\{\_\}|\\\_},
                  replace=\regexp{\_}]
        }
        \map{ % Replaces '{'$\sim$'}', '$\sim$' or '{~}' with just '~'
            \step[fieldsource=url,
                  match=\regexp{\{\$\\sim\$\}|\{\~\}|\$\\sim\$},
                  replace=\regexp{\~}]
        }
        \map{ % Replaces '{\_}', '{_}' or '\_' with just '_'
            \step[fieldsource=doi,
                  match=\regexp{\{\\\_\}|\{\_\}|\\\_},
                  replace=\regexp{\_}]
        }
        \map{ % Replaces '{'$\sim$'}', '$\sim$' or '{~}' with just '~'
            \step[fieldsource=doi,
                  match=\regexp{\{\$\\sim\$\}|\{\~\}|\$\\sim\$},
                  replace=\regexp{\~}]
        }
    }
}

% Start with roman numbers until the introduction
\pagenumbering{roman}

% handle the abbverviations ?
% Basic abbreviation page here, you can play around with the two "5cm"
% To increase or decrease the spacing between the abbreviation and the words
\usepackage{calc}
\makeatletter
\newcommand{\tocfill}{\cleaders\hbox{$\m@th \mkern\@dotsep mu . \mkern\@dotsep mu$}\hfill}
\makeatother
\newcommand{\abbrlabel}[1]{\makebox[5cm][l]{\textbf{#1}\ \tocfill}}
\newenvironment{abbreviations}{\begin{list}{}{\renewcommand{\makelabel}{\abbrlabel}%
        \setlength{\labelwidth}{5cm}\setlength{\leftmargin}{\labelwidth+\labelsep}%
                                              \setlength{\itemsep}{0pt}}}{\end{list}}
                                              
% crossed text, if you need it
\usepackage[normalem]{ulem}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{document}

%% Title page
\input{chapters/title}

% %%% Abstract
\input{chapters/abstract}

\input{chapters/remerciements.tex}

\tableofcontents

\listoffigures

\listoftables

% MAIN TEXT %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\input{chapters/abbrev.tex}

% normal numbering from here
\pagenumbering{arabic}

%%%% Each chapter is in a different file
%% In the [], how the chapter will be called in the table of contents
%% In the {}, the name of the chapter in the text
%% The chaptermark is the name of the chapter in the footer
%%% You want a small enough chaptermark or it will overflow to the sides
\chapter[Introduction]{Introduction}
\chaptermark{Introduction}
\input{chapters/intro}

\chapter[Matériel et méthodes]{Matériel et méthodes}
\chaptermark{Matériel et méthodes}
\input{chapters/methods}

\chapter[Chapitre 1: blabla]{Chapitre 1: blabla}
\chaptermark{Chapitre 1}
\input{chapters/chap1}

\chapter[Conclusion]{Conclusion}
\input{chapters/conclusion}

%%%% Bibliography before appendices
%%%% After the initial round, you need to fix it by hand depending on where you generate your .bib file from
%%%% Mendeley often messes with italics and accents for instance
\printbibliography

% Appendices
\input{chapters/appendix}

\end{document}